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41.
Andreas M. Küffner Miriam Linsenmeier Fulvio Grigolato Marc Prodan Remo Zuccarini Umberto Capasso Palmiero Lenka Faltova Paolo Arosio 《Chemical science》2021,12(12):4373
Biomolecular condensates are emerging as an efficient strategy developed by cells to control biochemical reactions in space and time by locally modifying composition and environment. Yet, local increase in protein concentration within these compartments could promote aberrant aggregation events, including the nucleation and growth of amyloid fibrils. Understanding protein stability within the crowded and heterogeneous environment of biological condensates is therefore crucial, not only when the aggregation-prone protein is the scaffold element of the condensates but also when proteins are recruited as client molecules within the compartments. Here, we investigate the partitioning and aggregation kinetics of the amyloidogenic peptide Abeta42 (Aβ-42), the peptide strongly associated with Alzheimer''s disease, recruited into condensates based on low complexity domains (LCDs) derived from the DEAD-box proteins Laf1, Dbp1 and Ddx4, which are associated with biological membraneless organelles. We show that interactions between Aβ-42 and the scaffold proteins promote sequestration and local increase of the peptide concentration within the condensates. Yet, heterotypic interactions within the condensates inhibit the formation of amyloid fibrils. These results demonstrate that biomolecular condensates could sequester aggregation-prone proteins and prevent aberrant aggregation events, despite the local increase in their concentration. Biomolecular condensates could therefore work not only as hot-spots of protein aggregation but also as protective reservoirs, since the heterogenous composition of the condensates could prevent the formation of ordered fibrillar aggregates.Biomolecular condensates sequester an aggregation-prone peptide and prevent its aggregation, showing that heterotypic interactions within the condensates can prevent the formation of amyloid fibrils, despite the local increase in concentration. 相似文献
42.
The heteroleptic neutral radical dithiolene complexes CpNi(dmit)., CpNi(dsit). and CpNi(dmid).(dmit=1,3-dithiole-2-thione-4,5-dithiolate; dsit=1,3-dithiole-2-thione-4,5-diselenolate; dmid=1,3-dithiole-2-one-4,5-dithiolate) are obtained from the reaction of (Cp2Ni)BF4 with either (n-Bu4N)[Ni(dmit)2] and (n-Bu4N)[Ni(dmid)2] or PhSb(dmit) and PhSb(dsit), respectively. The three complexes reduce reversibly to the corresponding Ni(II) anions and oxidize reversibly to the cationic state. As deduced from DFT calculations performed on CpNi(dmit)., the SOMO of these complexes is essentially localized on the dithiolene moiety with little metal contribution. CpNi(dsit). is isostructural with CpNi(dmit). and crystallizes in the monoclinic system, space group P2(1). In the solid-state structures of both CpNi(dmit). and CpNi(dsit)., molecules interact through a three-dimensional set of intermolecular interactions mediated by short SS, SeSe and SSe contacts, as confirmed from the temperature and field dependence of the magnetic susceptibility by the observation of an antiferromagnetic ground state below T(Neel)=27 K in CpNi(dmit)., 18 K in CpNi(dsit).. Finally, CpNi(dmid). crystallizes in the orthorhombic system, space group Pnma. Molecules organize into uniform chains through the stacking of the dmid moieties in a sigma-type face-to-face overlap. 相似文献
43.
Vlekken J D'Olieslaeger M Knuyt G Vandervorst W De Schepper L 《Journal of the American Society for Mass Spectrometry》2000,11(7):650-658
In secondary ion mass spectrometry, the detection of MCs+ clusters (with M an element of the specimen) under a Cs bombardment is frequently used for the quantification of major elements. Despite some very good results obtained by this method, some problems still remain. In order to gain some more insight into these problems, the formation mechanism of the MCs+ clusters is investigated using a Monte Carlo model. It is shown that the majority of the constituent particles of the formed clusters are initially first or second neighbor atoms at the surface and that the velocity distribution of the MCs+ clusters becomes broader and peaked at higher velocities with increasing surface binding energy of the M atom. In addition, it is demonstrated that the interaction potential between the M and Cs+ particle has no influence on the velocity distribution of the MCs+ clusters. On the other hand, the cluster formation probability, defined as the probability that a sputtered M and Cs+ particle will form a MCs+ cluster, is extremely sensitive to this interaction potential. It is also shown that the cluster formation probability decreases with increasing surface binding energy. Finally, a good correspondence is obtained between the calculated and experimental velocity distributions of MCs+ clusters sputtered from different monoatomic materials. As a consequence, the Monte Carlo model and the discussed results can be validated. 相似文献
44.
Artem Malakho Marc Dussauze Bogdan Lazoryak Frederic Adamietz 《Journal of solid state chemistry》2005,178(6):1888-1897
Crystallization of glasses with compositions (1−x)(0.95 NaPO3+0.05 Na2B4O7)+xNb2O5, x=0.4, 0.43, 0.45, 0.48 was investigated by differential scanning calorimetry and X-ray powder diffraction. Crystallization of two phases was observed in the glasses with x=0.43-0.48. First phase is a sodium niobate with the structure of tetragonal tungsten bronze () and second phase is Na4Nb8P4O32 (). The crystallization of sodium niobate is correlated with increasing of nonlinear optical efficiency reported for thermally poled glasses with x>0.4. The results of Raman spectroscopy show the formation of three-dimensional (3D) niobium oxide framework in the glasses with increase of niobium concentration. This framework is supposed to have tetragonal tungsten bronze structure and to be responsible for nonlinear optical properties of the glass. Second harmonic generation signals of as prepared and crystallized glass after thermal poling are compared. The nucleation and crystallization do not improve the NLO properties of the glasses under study. 相似文献
45.
This paper presents a detailed study of a water adlayer adsorbed on Pt(111) and Rh(111) surfaces using periodic density functional theory methods. The interaction between the metal surface and the water molecules is assessed from molecular dynamics simulation data and single point electronic structure calculations of selected configurations. It is argued that the electron bands around the Fermi level of the metal substrate extend over the water adlayer. As a consequence in the presence of the water layer the surface as a whole still maintains its metallic conductivity-a result of a crucial importance for understanding the process of electron transfer through the water/metal interface and electrochemical reactions in particular. Our results also indicate that there exists a weak bond between the hydrogen of the water and the Rh metal atoms as opposed to the widespread (classical) models based on purely repulsive interaction. This suggests that the commonly used classical interactions potentials adopted for large scale molecular dynamics simulations of water/metal interfaces may need revision. Two adsorption models of water on transition metals with the OH bonds pointing towards or away of the surface are also examined. It is shown that due to the very close values of their adsorption energies one should consider the real structure of water on the surface as a mixture of these simple "up" and "down" models. A model for the structure of the adsorbed water layer on Rh(111) is proposed in terms of statistical averages from molecular dynamics simulations. 相似文献
46.
Plumb RS Stumpf CL Gorenstein MV Castro-Perez JM Dear GJ Anthony M Sweatman BC Connor SC Haselden JN 《Rapid communications in mass spectrometry : RCM》2002,16(20):1991-1996
The application of liquid chromatography/mass spectrometry (LC/MS) followed by principal components analysis (PCA) has been successfully applied to the screening of rat urine following the administration of three candidate pharmaceuticals. With this methodology it was possible to differentiate the control samples from the dosed samples and to identify the components of the mass spectrum responsible for the separation. These data clearly show that LC/MS is a viable alternative, or complementary, technique to proton NMR for metabonomics applications in drug discovery and development. 相似文献
47.
The amidinoethylation of alcohols takes place by the addition of sodium alkoxides 2 (R1 = Me, Et) to the CC double bond of a variety of N,N'-substituted-propenamidines 1 (Method A). This illustrates the activation of the CC double bond by the conjugated amidine function and provides a new class of Michael acceptors for alcohols. However, this activation is poorer than with other nucleophiles or Michael acceptors. The amidinoethylation makes available 3-alkoxy-N,N'-substituted-amidines not easily accessible by other classical methods. However, it is demonstrated that the general N,N'-substituted-amidine synthesis via the nitrilium salts can also apply to nitrile compounds having an alkoxygroup present on the molecule (method B). Since the cyanoethylation of alcohols (4) is a very fast and facile reaction the method B is the preferred strategy for the synthesis of 3-alkoxy-N,N'-substituted-propanamidines 3. 相似文献
48.
49.
Marc Henry 《Journal of Cluster Science》2003,14(3):267-287
Among Achim Müller's prolific crystal structure database, we have selected two crystalline phases in order to perform a whole and complete characterization of water structure at the nanometer scale. The first chosen example involves the Na3(NH4)12[Mo57Fe6(NO)6O174(OH)3(H2O)24] 76H2O compound synthesized and characterized in 1994. Some very interesting yet unnoticed water clusters may be evidenced in the voids generated by the stacking of the polyanionic units. Among them, we have been able to characterized a pure water crown (H2O)18, a loose association of three strongly solvated ammonium ions [H3N–HOH2]+ mediated by two water dimers and one water molecule, a perfectly planar alternating six-member ring [(NH4)3(H2O)3]3+, a puckered chair-shaped hexagonal ring [(NH4)2(H2O)4]3+ and two triangular pyramidal water tetramers (H2O)4. It was also shown that the crown and the chair ring was involved through further hydrogen bonding into the formation of a quite novel supramolecular layer modeling the structure of water in contact with a polyelectrolyte. The second example involves the (gua)32[Mo132O372(H2O)72(SO4)10(H2PO2)20(gua)20]nH2O compound synthesized and characterized in 2002. Here, we provide for the first time a complete structural analysis of all the various hydrogen bond patterns encountered in this system. Among them we may cite, an intramolecular web covering the internal cavity, an intramolecular finite system involving the guanidinium cations and the nine-member ring pores of the Mo132 shell and a central pure water cluster of one hundred water molecules. In this last case, the evolution of the hydrogen bond strengths on a per H-bond basis or within supramolecular aggregates ([H2O]20, [H2O]40, and [H2O]100) is quantitatively studied from standpoints involving both geometry (H–OO bond angles distribution) and energy (partition functions). A survey of other crystalline phases involving water clusters is also presented. It is hoped that the study of these new clusters in a very next future will allow us to solve the well-known water puzzling behaviors. 相似文献
50.
Evelina Liarou Yisong Han Ana M. Sanchez Marc Walker David M. Haddleton 《Chemical science》2020,11(20):5257
Rapidly self-deoxygenating Cu-RDRP in aqueous media is investigated. The disproportionation of Cu(i)/Me6Tren in water towards Cu(ii) and highly reactive Cu(0) leads to O2-free reaction environments within the first seconds of the reaction, even when the reaction takes place in the open-air. By leveraging this significantly fast O2-reducing activity of the disproportionation reaction, a range of well-defined water-soluble polymers with narrow dispersity are attained in a few minutes or less. This methodology provides the ability to prepare block copolymers via sequential monomer addition with little evidence for chain termination over the lifetime of the polymerization and allows for the synthesis of star-shaped polymers with the use of multi-functional initiators. The mechanism of self-deoxygenation is elucidated with the use of various characterization tools, and the species that participate in the rapid oxygen consumption is identified and discussed in detail.The rapidly self-deoxygenating Cu-RDRP in aqueous media is investigated. 相似文献